specimen mapping
| field | GDC | PDC | IDC |
|---|---|---|---|
| id | {'samples': 'files.cases.samples.sample_id', 'portions': 'files.cases.samples.portions.portion_id', 'slides': 'files.cases.samples.portions.slides.slide_id', 'analytes': 'files.cases.samples.portions.analytes.analyte_id', 'aliquots': 'files.cases.samples.portions.analytes.aliquots.aliquot_id'} | {'samples': 'files.cases.samples.sample_id', 'aliquots': 'files.cases.samples.aliquots.aliquot_id'} | NOT CURRENTLY MAPPED |
| identifier.system | GDC | PDC | NOT CURRENTLY MAPPED |
| identifier.value | {'samples': 'files.cases.samples.sample_id', 'portions': 'files.cases.samples.portions.portion_id', 'slides': 'files.cases.samples.portions.slides.slide_id', 'analytes': 'files.cases.samples.portions.analytes.analyte_id', 'aliquots': 'files.cases.samples.portions.analytes.aliquots.aliquot_id'} | {'samples': 'files.cases.samples.sample_id', 'aliquots': 'files.cases.samples.aliquots.aliquot_id'} | NOT CURRENTLY MAPPED |
| associated_project | files.cases.project.project_id | files.cases.project_submitter_id | NOT CURRENTLY MAPPED |
| days_to_collection | files.cases.samples.days_to_sample_procurement | files.cases.samples.days_to_sample_procurement | NOT CURRENTLY MAPPED |
| primary_disease_type | files.cases.disease_type | files.cases.disease_type | NOT CURRENTLY MAPPED |
| anatomical_site | files.cases.samples.biospecimen_anatomic_site | files.cases.samples.biospecimen_anatomic_site | NOT CURRENTLY MAPPED |
| source_material_type | files.cases.samples.sample_type | files.cases.samples.sample_type | NOT CURRENTLY MAPPED |
| specimen_type | {'samples': 'sample', 'portions': 'portion', 'slides': 'slide', 'analytes': 'analyte', 'aliquots': 'aliquot'} | {'samples': 'sample', 'aliquots': 'aliquot'} | NOT CURRENTLY MAPPED |
| derived_from_specimen | {'samples': 'initial specimen', 'portions': 'files.cases.samples.sample_id', 'slides': 'files.cases.samples.portions.portion_id', 'analytes': 'files.cases.samples.portions.portion_id', 'aliquots': 'files.cases.samples.portions.analytes.analyte_id'} | {'samples': 'initial specimen', 'aliquots': 'files.cases.samples.sample_id'} | NOT CURRENTLY MAPPED |
| derived_from_subject | files.cases.submitter_id | files.cases.case_submitter_id | NOT CURRENTLY MAPPED |
Last update:
2022-06-17